PhytophthoraV1, Main, Exploration, bibRecord, 000159

Identification of tomato circular RNAs responsive to Phytophthora infestans.

Identifieur interne : 000159 ( Main/Exploration ); précédent : 000158; suivant : 000160

Identification of tomato circular RNAs responsive to Phytophthora infestans.

Auteurs : Yu-Hui Hong [République populaire de Chine] ; Jun Meng [République populaire de Chine] ; Min Zhang [République populaire de Chine] ; Yu-Shi Luan [République populaire de Chine]

Source :

Gene [ 1879-0038 ] ; 2020.

RBID : pubmed:32259631

Descripteurs français

KwdFr :
- ARN des plantes (biosynthèse), ARN des plantes (génétique), Lycopersicon esculentum (génétique), Lycopersicon esculentum (microbiologie), Lycopersicon esculentum (métabolisme), Maladies des plantes (génétique), Maladies des plantes (microbiologie), Phytophthora infestans (MeSH), Régulation de l'expression des gènes végétaux (MeSH), Résistance à la maladie (génétique), microARN (biosynthèse), microARN (génétique).
MESH :
- biosynthèse : ARN des plantes, microARN.
- génétique : ARN des plantes, Lycopersicon esculentum, Maladies des plantes, Résistance à la maladie, microARN.
- microbiologie : Lycopersicon esculentum, Maladies des plantes.
- métabolisme : Lycopersicon esculentum.
- Phytophthora infestans, Régulation de l'expression des gènes végétaux.

English descriptors

KwdEn :
- Disease Resistance (genetics), Gene Expression Regulation, Plant (MeSH), Lycopersicon esculentum (genetics), Lycopersicon esculentum (metabolism), Lycopersicon esculentum (microbiology), MicroRNAs (biosynthesis), MicroRNAs (genetics), Phytophthora infestans (MeSH), Plant Diseases (genetics), Plant Diseases (microbiology), RNA, Circular (biosynthesis), RNA, Circular (genetics), RNA, Plant (biosynthesis), RNA, Plant (genetics).
MESH :
- chemical , biosynthesis : MicroRNAs, RNA, Circular, RNA, Plant.
- genetics : Disease Resistance, Lycopersicon esculentum, MicroRNAs, Plant Diseases, RNA, Circular, RNA, Plant.
- metabolism : Lycopersicon esculentum.
- microbiology : Lycopersicon esculentum, Plant Diseases.
- Gene Expression Regulation, Plant, Phytophthora infestans.

Abstract

Circular RNAs (circRNAs), a novel branch of noncoding RNAs, are widespread in eukaryotic cells. Particularly, due to their abilities to bind microRNA (miRNA) and serve as "sponges", circRNAs can regulate gene expression and participate in multiple biological processes. To detect the function of the circRNAs in tomato resistance, in our study, high-throughput sequencing were used to detect the circRNAs in tomatoes before and after Phytophthora infestans (P. infestans) infection. A total of 68 circRNAs were identified, of them, 18 (26%) were termed as exonic circRNAs, 33 (49%) were termed as intergenic circRNAs, 17 (25%) were termed as intronic circRNAs. Thirty-six out of 68 circRNAs differentially expressed in tomatoes after infection, including 9 up- and 27 down-regulated. Among the up-regulated circRNAs, two exoinc circRNAs, circRNA45 and circRNA47 were annotated as whitefly-induced gp91-phox and ethylene-forming enzyme, respectively. Both of them could act as miR477-3p sponge. Transgenic plants transiently overexpressed circRNA45 and circRNA47 both displayed smaller lesion area than the control plants upon infection, accompanied by lower expression levels of miR477-3p. Furthermore, transiently overexpression of miR477-3p in tomatoes leading to a decline in their targeted disease related genes expression. Our results firstly identified circRNAs in tomato upon P. infestans infection and demonstrated that circRNA45 and circRNA47 may act as positive regulators in tomato resistance by regulating miRNA-mRNAs expression levels.

DOI: 10.1016/j.gene.2020.144652
PubMed: 32259631

Affiliations:

République populaire de Chine

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000225
to stream Main, to step Curation: 000225

Le document en format XML

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<author><name sortKey="Meng, Jun" sort="Meng, Jun" uniqKey="Meng J" first="Jun" last="Meng">Jun Meng</name>
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<author><name sortKey="Zhang, Min" sort="Zhang, Min" uniqKey="Zhang M" first="Min" last="Zhang">Min Zhang</name>
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<author><name sortKey="Luan, Yu Shi" sort="Luan, Yu Shi" uniqKey="Luan Y" first="Yu-Shi" last="Luan">Yu-Shi Luan</name>
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<author><name sortKey="Meng, Jun" sort="Meng, Jun" uniqKey="Meng J" first="Jun" last="Meng">Jun Meng</name>
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<author><name sortKey="Zhang, Min" sort="Zhang, Min" uniqKey="Zhang M" first="Min" last="Zhang">Min Zhang</name>
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<author><name sortKey="Luan, Yu Shi" sort="Luan, Yu Shi" uniqKey="Luan Y" first="Yu-Shi" last="Luan">Yu-Shi Luan</name>
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<country xml:lang="fr">République populaire de Chine</country>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Disease Resistance (genetics)</term>
<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Lycopersicon esculentum (genetics)</term>
<term>Lycopersicon esculentum (metabolism)</term>
<term>Lycopersicon esculentum (microbiology)</term>
<term>MicroRNAs (biosynthesis)</term>
<term>MicroRNAs (genetics)</term>
<term>Phytophthora infestans (MeSH)</term>
<term>Plant Diseases (genetics)</term>
<term>Plant Diseases (microbiology)</term>
<term>RNA, Circular (biosynthesis)</term>
<term>RNA, Circular (genetics)</term>
<term>RNA, Plant (biosynthesis)</term>
<term>RNA, Plant (genetics)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>ARN des plantes (biosynthèse)</term>
<term>ARN des plantes (génétique)</term>
<term>Lycopersicon esculentum (génétique)</term>
<term>Lycopersicon esculentum (microbiologie)</term>
<term>Lycopersicon esculentum (métabolisme)</term>
<term>Maladies des plantes (génétique)</term>
<term>Maladies des plantes (microbiologie)</term>
<term>Phytophthora infestans (MeSH)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Résistance à la maladie (génétique)</term>
<term>microARN (biosynthèse)</term>
<term>microARN (génétique)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="biosynthesis" xml:lang="en"><term>MicroRNAs</term>
<term>RNA, Circular</term>
<term>RNA, Plant</term>
</keywords>
<keywords scheme="MESH" qualifier="biosynthèse" xml:lang="fr"><term>ARN des plantes</term>
<term>microARN</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Disease Resistance</term>
<term>Lycopersicon esculentum</term>
<term>MicroRNAs</term>
<term>Plant Diseases</term>
<term>RNA, Circular</term>
<term>RNA, Plant</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN des plantes</term>
<term>Lycopersicon esculentum</term>
<term>Maladies des plantes</term>
<term>Résistance à la maladie</term>
<term>microARN</term>
</keywords>
<keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Lycopersicon esculentum</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Lycopersicon esculentum</term>
<term>Maladies des plantes</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Lycopersicon esculentum</term>
<term>Plant Diseases</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Lycopersicon esculentum</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Gene Expression Regulation, Plant</term>
<term>Phytophthora infestans</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Phytophthora infestans</term>
<term>Régulation de l'expression des gènes végétaux</term>
</keywords>
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<front><div type="abstract" xml:lang="en">Circular RNAs (circRNAs), a novel branch of noncoding RNAs, are widespread in eukaryotic cells. Particularly, due to their abilities to bind microRNA (miRNA) and serve as "sponges", circRNAs can regulate gene expression and participate in multiple biological processes. To detect the function of the circRNAs in tomato resistance, in our study, high-throughput sequencing were used to detect the circRNAs in tomatoes before and after Phytophthora infestans (P. infestans) infection. A total of 68 circRNAs were identified, of them, 18 (26%) were termed as exonic circRNAs, 33 (49%) were termed as intergenic circRNAs, 17 (25%) were termed as intronic circRNAs. Thirty-six out of 68 circRNAs differentially expressed in tomatoes after infection, including 9 up- and 27 down-regulated. Among the up-regulated circRNAs, two exoinc circRNAs, circRNA45 and circRNA47 were annotated as whitefly-induced gp91-phox and ethylene-forming enzyme, respectively. Both of them could act as miR477-3p sponge. Transgenic plants transiently overexpressed circRNA45 and circRNA47 both displayed smaller lesion area than the control plants upon infection, accompanied by lower expression levels of miR477-3p. Furthermore, transiently overexpression of miR477-3p in tomatoes leading to a decline in their targeted disease related genes expression. Our results firstly identified circRNAs in tomato upon P. infestans infection and demonstrated that circRNA45 and circRNA47 may act as positive regulators in tomato resistance by regulating miRNA-mRNAs expression levels.</div>
</front>
</TEI>
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<DateCompleted><Year>2020</Year>
<Month>05</Month>
<Day>12</Day>
</DateCompleted>
<DateRevised><Year>2020</Year>
<Month>05</Month>
<Day>18</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1879-0038</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>746</Volume>
<PubDate><Year>2020</Year>
<Month>Jul</Month>
<Day>01</Day>
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<Title>Gene</Title>
<ISOAbbreviation>Gene</ISOAbbreviation>
</Journal>
<ArticleTitle>Identification of tomato circular RNAs responsive to Phytophthora infestans.</ArticleTitle>
<Pagination><MedlinePgn>144652</MedlinePgn>
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<Abstract><AbstractText>Circular RNAs (circRNAs), a novel branch of noncoding RNAs, are widespread in eukaryotic cells. Particularly, due to their abilities to bind microRNA (miRNA) and serve as "sponges", circRNAs can regulate gene expression and participate in multiple biological processes. To detect the function of the circRNAs in tomato resistance, in our study, high-throughput sequencing were used to detect the circRNAs in tomatoes before and after Phytophthora infestans (P. infestans) infection. A total of 68 circRNAs were identified, of them, 18 (26%) were termed as exonic circRNAs, 33 (49%) were termed as intergenic circRNAs, 17 (25%) were termed as intronic circRNAs. Thirty-six out of 68 circRNAs differentially expressed in tomatoes after infection, including 9 up- and 27 down-regulated. Among the up-regulated circRNAs, two exoinc circRNAs, circRNA45 and circRNA47 were annotated as whitefly-induced gp91-phox and ethylene-forming enzyme, respectively. Both of them could act as miR477-3p sponge. Transgenic plants transiently overexpressed circRNA45 and circRNA47 both displayed smaller lesion area than the control plants upon infection, accompanied by lower expression levels of miR477-3p. Furthermore, transiently overexpression of miR477-3p in tomatoes leading to a decline in their targeted disease related genes expression. Our results firstly identified circRNAs in tomato upon P. infestans infection and demonstrated that circRNA45 and circRNA47 may act as positive regulators in tomato resistance by regulating miRNA-mRNAs expression levels.</AbstractText>
<CopyrightInformation>Copyright © 2020 Elsevier B.V. All rights reserved.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Hong</LastName>
<ForeName>Yu-Hui</ForeName>
<Initials>YH</Initials>
<AffiliationInfo><Affiliation>School of Bioengineering, Dalian University of Technology, Dalian 116024, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Meng</LastName>
<ForeName>Jun</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>School of Computer Science and Technology, Dalian University of Technology, Dalian 116024, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zhang</LastName>
<ForeName>Min</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>School of Bioengineering, Dalian University of Technology, Dalian 116024, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Luan</LastName>
<ForeName>Yu-Shi</ForeName>
<Initials>YS</Initials>
<AffiliationInfo><Affiliation>School of Bioengineering, Dalian University of Technology, Dalian 116024, China. Electronic address: ysluan@dlut.edu.cn.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2020</Year>
<Month>04</Month>
<Day>04</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>Netherlands</Country>
<MedlineTA>Gene</MedlineTA>
<NlmUniqueID>7706761</NlmUniqueID>
<ISSNLinking>0378-1119</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D035683">MicroRNAs</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D000079962">RNA, Circular</NameOfSubstance>
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<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D018749">RNA, Plant</NameOfSubstance>
</Chemical>
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<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D060467" MajorTopicYN="N">Disease Resistance</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018506" MajorTopicYN="Y">Gene Expression Regulation, Plant</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018551" MajorTopicYN="Y">Lycopersicon esculentum</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D035683" MajorTopicYN="N">MicroRNAs</DescriptorName>
<QualifierName UI="Q000096" MajorTopicYN="N">biosynthesis</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D055750" MajorTopicYN="Y">Phytophthora infestans</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010935" MajorTopicYN="Y">Plant Diseases</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000079962" MajorTopicYN="Y">RNA, Circular</DescriptorName>
<QualifierName UI="Q000096" MajorTopicYN="N">biosynthesis</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018749" MajorTopicYN="Y">RNA, Plant</DescriptorName>
<QualifierName UI="Q000096" MajorTopicYN="N">biosynthesis</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Circular RNAs</Keyword>
<Keyword MajorTopicYN="N">Resistance</Keyword>
<Keyword MajorTopicYN="N">Tomato</Keyword>
<Keyword MajorTopicYN="N">Transiently overexpression</Keyword>
<Keyword MajorTopicYN="N">miRNA</Keyword>
</KeywordList>
<CoiStatement>Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.</CoiStatement>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year>
<Month>01</Month>
<Day>16</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="revised"><Year>2020</Year>
<Month>03</Month>
<Day>27</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2020</Year>
<Month>04</Month>
<Day>03</Day>
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<PubMedPubDate PubStatus="pubmed"><Year>2020</Year>
<Month>4</Month>
<Day>8</Day>
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<affiliations><list><country><li>République populaire de Chine</li>
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Identification of tomato circular RNAs responsive to Phytophthora infestans.

Identification of tomato circular RNAs responsive to Phytophthora infestans.

Source :

Descripteurs français

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

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